Programming for Bioinformatics Applications detailed syllabus for Biotechnology (BioTech) for 2021 regulation curriculum has been taken from the Anna Universities official website and presented for the BioTech students. For course code, course name, number of credits for a course and other scheme related information, do visit full semester subjects post given below.
For Biotechnology 7th Sem scheme and its subjects, do visit BioTech 7th Sem 2021 regulation scheme. For Professional Elective-VI scheme and its subjects refer to BioTech Professional Elective-VI syllabus scheme. The detailed syllabus of programming for bioinformatics applications is as follows.
Course Objectives:
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Unit I
INTRODUCTION 9
Introduction to Operating systems, Linux commands, File transfer protocols FTP and telnet, Data life cycle, Database management system models. Structured Query Language (SQL) – Data Definition Language (DDL), Data Manipulation Language (DML) and Query by example.PL/SQL -Stored procedure, Database triggers; Relational Data Base Management system.
Unit II
PERL PROGRAMMING 9
Perl overview, variables and data types, control Structure, loops- while loop, for loop, until loop, File handles – opening and closing files, reading and writing file handles, Library Functions: String specific functions, User defined functions.
Unit III
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Unit IV
REGULAR EXPRESSIONS 9
Simple characters, * special character, . character, | character, Grouping with ()s, anchor characters, pattern matching, regular expression shortcuts, defining subroutines, returning values, using arguments, inheritance in Perl, polymorphism in Perl.
Unit V
APPLICATIONS OF PERL IN BIOINFORMATICS 9
Concatenating DNA Fragments, Transcription: DNA to RNA, Reading Protein Files, Finding Motifs, Simulating DNA, Generating Random DNA, Analysing DNA, Translating DNA to Proteins, Reading DNA from Files in FASTA format, Separating Sequence and Annotation, Parsing Annotation, Parsing PDB files, Parsing BLAST output, Bio-perl .
Course Outcomes:
Upon completion of this course,
Students will be able to
- Understand the basics of Linux operating system and the SQL for database creation and management.
- Use the Perl data types to construct programs in Perl.
- Apply the various operators, Regular expressions, conditional statements and loops in Perl programs.
- Understand the applications of Perl Programming in handling genomics and Proteomics data.
Text Books:
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Reference Books:
- Cynthia Gibas& Per Jambeck, “Developing Bioinformatics Computer Skills”, O’Reilly & Associates, 2000.
- Rex A. Dawyer, “Genomic Perl”, Cambridge University Press 3. Learning Perl, 3rd Edition , Author: Randal L. Schwartz and Tom Phoenix O’Reilly
For detailed syllabus of all the other subjects of Biotechnology 7th Sem, visit BioTech 7th Sem subject syllabuses for 2021 regulation.
For all Biotechnology results, visit Anna University BioTech all semester results direct link.