Bioinformatics and Basics of R -Programming detailed syllabus for Biotechnology & Biochemical Engineering (BBE) for 2021 regulation curriculum has been taken from the Anna Universities official website and presented for the BBE students. For course code, course name, number of credits for a course and other scheme related information, do visit full semester subjects post given below.
For Biotechnology & Biochemical Engineering 6th Sem scheme and its subjects, do visit BBE 6th Sem 2021 regulation scheme. For Professional Elective-IV scheme and its subjects refer to BBE Professional Elective-IV syllabus scheme. The detailed syllabus of bioinformatics and basics of r -programming is as follows.
Course Objectives:
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Unit I
BIOLOGICAL DATABASES 9
Nucleotide databanks – Genbank, NCBI, EMBL, DDBJ – protein databanks -sequence databanks – PIR, SWISSPROT, TrEMBL- structural databases – PDB, SCOP, CATH.
Unit II
SEQUENCING ALIGNMENT AND DYNAMIC PROGRAMMING 9
Local, Global alignment, pairwise and multiple sequence alignments. Alignment algorithms. Dynamic programming in ^sequence alignment: Needleman-Wunsch Algorithm and Smith Waterman Algorithm, Aminoacid Substitution matrices (PAM, BLOSUM).
Unit III
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Unit IV
INTRODUCTION & R OBJECTS 9
R console, CRAN, Installation, configuration, R studio environment setup, Basic syntax, Data types, Variables, Operators, Vectors , Lists, Matrices, Arrays, Factors , Data frames
Unit V
R PACKAGES & DATA INTERFACES 9
Installing a package from CRAN, Manual installation and configuration of a package, loading package to library, Exploring R packages for Bioinformatics applications
Course Outcomes:
The students will be able to
- Familiarized with various biological database and software tools
- Predict the structure and functions of biomolecules
- Apprehend the knowledge on ligand and structure based drug design
- Enable to write, compile, and run R programs.
- Analyze data from different interfaces
- Develop R script for various biological problems.
Text Books:
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Reference Books:
- VenkatAnkam, “Big Data analytics”, Packt publishing 2016
- Parag Kulkarni, Sarang Joshi, “Big Data analytics”, PHI learning 2016
- D.W. Mount. Bioinformatics: Sequence and Genome Analysis. Cold Spring Harbour Laboratory Press, New York, 2012.
For detailed syllabus of all the other subjects of Biotechnology & Biochemical Engineering 6th Sem, visit BBE 6th Sem subject syllabuses for 2021 regulation.
For all Biotechnology & Biochemical Engineering results, visit Anna University BBE all semester results direct link.