Bioinformatics and Applications Syllabus for Biomedical Signal Processing and Instrumentation M.Tech first year first sem is covered here. This gives the details about credits, number of hours and other details along with reference books for the course.
The detailed syllabus for Bioinformatics and Applications M.Tech 2017-2018 (R17) first year first sem is as follows.
M.Tech. I Year I Sem.
UNIT -I : The Central Dogma & XML (Bio XML) for Bioinformatics: Watson’s definition, information flow, from data to knowledge, Convergence, the organization of DNA, the organization of Proteins, Introduction, Differences between HTML and XML, fundamentals of XML, fundamentals of XML namespaces. Introduction to DTDs, Document type Declarations, Declaring elements, declaring attributes, working with entities XML Schemas, Essential Concepts, working with simple types, working with complex types, Basic namespaces issues.
UNIT -II : Perl (Bioperl) for Bioinformatics: Representing sequence data, program to store a DNA sequence, concatenating DNA fragments, Transcription, Calculating the reverse complement in Perl, Proteins, files, reading proteins in files, Arrays, Flow control, finding motifs, counting Nucleotides, exploding strings into arrays, operating on strings, writing to files, subroutines and bugs.
UNIT -III : Databases: Flat file, Relational, object oriented databases, object Relational and Hypertext, Data life cycle, Database Technology, Database Architecture, Database Management Systems and Interfaces.
UNIT -IV : Sequence Alignment Algorithms: Biological motivations of sequence analysis, the models for sequence analysis and their biological motivation, global alignment, local alignment, End free-space alignment and gap penalty, Sequence Analysis tools and techniques.
UNIT -V : Phylogenetic Analysis: Introduction, methods of Phylogenetic analysis, distance methods, the neighbor- Joining (NJ) method, The Fitch/ Margoliash method, character-based methods, Other methods, Tree evaluation and problems in phylogenetic analysis, Clustering, Protein structure visualization and Protein structure prediction.
TEXT BOOKS:
- S.C.Rastogi, N. Mendiratta, “Bioinformatics Methods and Applications”, CBS publications, 2004
- James D. Tisdall, “Beginning Perl for Bioinformatics” O’Reilly media, 1st Edition, 2001
REFERENCE BOOKS:
- D.R. Westhead, J.H. Parish, “Bioinformatics” Viva books private limited, New Delhi (2003)
- Att Wood, “Bioinformatics” Pearson Education, 2004
- Bryan Bergeron, M.D, “Bioinformatics Computing” Pearson Education, 2003
For all other M.Tech 1st Year 1st Sem syllabus go to JNTUH M.Tech Biomedical Signal Processing and Instrumentation 1st Year 1st Sem Course Structure for (R17) Batch.
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